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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
19
RRBS
WGBS
Assay category
64
DNA accessibility
19
DNA methylation
Date released
64
August, 2021
15
July, 2019
4
August, 2017
Available data
3354
bam
3137
bigWig
1804
bed narrowPeak
1594
tsv
1341
fastq
1029
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
271
bed bed3+
161
txt
112
zippedFastqFolder
64
xls
22
bedpe bed3+
21
hic
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
83
Homo sapiens
Biosample type
73
tissue
10
primary cell
Organ
68
kidney
6
epithelium
3
musculature of body
2
brain
2
heart
2
liver
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
83
AMP
Genome assembly (visualization)
64
GRCh38
19
hg19
Lab
64
Katalin Susztak, Upenn
19
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
vein
assay_title!
WGBS
BIOSAMPLE
ASSAY
83 results
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ATAC-seq
RRBS
tissue
kidney
64
1
skeletal muscle tissue
2
brain
1
heart left ventricle
1
islet of Langerhans
1
+ See 3 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
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