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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
76
DNA binding
10
DNA accessibility
Target of assay
108
histone modification
107
histone
broad histone mark
50
narrow histone mark
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
268
November, 2017
202
June, 2019
131
October, 2019
98
August, 2021
86
August, 2017
73
November, 2018
69
May, 2021
65
February, 2023
57
December, 2017
39
May, 2019
38
May, 2022
31
November, 2019
30
December, 2018
29
September, 2018
28
April, 2019
27
May, 2020
26
October, 2018
23
February, 2021
20
May, 2024
17
January, 2019
8
February, 2018
7
July, 2019
7
October, 2017
5
September, 2017
3
March, 2020
2
November, 2020
Available data
238
fastq
233
bam
211
bigWig
89
tsv
86
bed narrowPeak
40
tagAlign
27
bed bed3+
24
bigBed narrowPeak
19
bed broadPeak
9
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
84
Homo sapiens
Biosample type
34
tissue
31
in vitro differentiated cells
21
primary cell
Organ
34
connective tissue
26
pancreas
11
epithelium
11
liver
5
musculature of body
3
adipose tissue
Project
86
AMP
Genome assembly (visualization)
86
hg19
74
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vein
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
86 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
9
1
1
liver
10
skeletal muscle tissue
5
pancreas
4
adipose tissue
1
+ See 3 more…
in vitro differentiated cells
adipocyte
30
1
primary cell
skeletal muscle myoblast
8
2
pancreatic alpha cell
4
1
pancreatic beta cell
4
1
pancreatic acinar cell
1
See all biosamples
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