Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
19
Hi-C
3
pCHi-C
Assay category
64
DNA accessibility
19
3D chromatin structure
Date released
66
August, 2021
11
March, 2020
3
October, 2019
3
October, 2022
2
November, 2019
1
August, 2018
Available data
3372
bam
3114
bigWig
1764
bed narrowPeak
1600
tsv
1358
fastq
1029
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
22
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
86
Homo sapiens
Biosample type
74
tissue
7
in vitro differentiated cells
3
primary cell
2
cell line
Organ
64
kidney
7
pancreas
5
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
vein
Project
83
AMP
3
HPAP
Genome assembly (visualization)
64
GRCh38
20
hg19
Lab
64
Katalin Susztak, Upenn
17
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
3
audit script error
organ_slims!
vein
BIOSAMPLE
ASSAY
86 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
Hi-C
pCHi-C
tissue
kidney
64
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
Download