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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
77
ChIP-seq
Assay category
77
DNA binding
Target of assay
49
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
13
August, 2017
Available data
3165
bam
2907
bigWig
1600
tsv
1557
bed narrowPeak
1346
fastq
822
bigBed narrowPeak
398
tagAlign
161
txt
153
zippedFastqFolder
114
bed broadPeak
77
bigBed broadPeak
69
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
22
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
77
Homo sapiens
Biosample type
58
cell line
19
primary cell
Organ
58
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
vein
Project
77
AMP
Genome assembly (visualization)
77
hg19
62
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
vein
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
77 results
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ChIP-seq
cell line
HepG2
58
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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