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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
19
RRBS
17
WGBS
13
ChIP-seq
Assay category
204
DNA accessibility
36
DNA methylation
13
DNA binding
Target of assay
11
histone
11
histone modification
6
broad histone mark
5
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
November, 2017
23
July, 2019
21
August, 2017
16
November, 2018
5
October, 2019
1
November, 2020
Available data
2980
bam
2820
bigWig
1600
tsv
1491
bed narrowPeak
1034
fastq
717
bigBed narrowPeak
320
tagAlign
271
bed bed3+
248
bed broadPeak
217
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
22
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
253
Homo sapiens
Biosample type
201
tissue
49
primary cell
2
cell line
1
in vitro differentiated cells
Organ
82
kidney
38
heart
37
limb
37
musculature of body
34
brain
24
epithelium
18
ureter
15
vasculature
13
pancreas
12
blood vessel
12
connective tissue
8
liver
5
eye
4
adipose tissue
4
artery
vein
3
spleen
2
nerve
1
pericardium
Project
253
AMP
Genome assembly (visualization)
232
GRCh38
213
hg19
Lab
253
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
vein
month_released!
November, 2017
BIOSAMPLE
ASSAY
253 results
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DNase-seq
RRBS
WGBS
ChIP-seq
tissue
heart
18
1
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
1
+ See 45 more…
primary cell
skeletal muscle myoblast
1
1
13
cardiac fibroblast
3
1
cardiac muscle cell
1
1
choroid plexus epithelial cell
1
1
epithelial cell of proximal tubule
1
1
+ See 17 more…
cell line
HepG2
1
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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