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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
77
ChIP-seq
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
Assay category
264
DNA accessibility
77
DNA binding
52
Transcription
41
DNA methylation
Target of assay
49
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
134
May, 2022
64
November, 2017
19
September, 2020
15
August, 2017
9
November, 2018
5
October, 2019
1
November, 2020
Available data
3372
bam
3114
bigWig
1764
bed narrowPeak
1600
tsv
1358
fastq
1029
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
22
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
434
Homo sapiens
Biosample type
198
primary cell
176
tissue
59
cell line
1
in vitro differentiated cells
Organ
102
epithelium
87
pancreas
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
vein
2
adipose tissue
2
nerve
1
spleen
Project
281
AMP
153
HPAP
Genome assembly (visualization)
265
GRCh38
258
hg19
Lab
281
AMP-T2D consortium
153
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
vein
BIOSAMPLE
ASSAY
434 results
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DNase-seq
ChIP-seq
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
skeletal muscle myoblast
1
13
pancreatic acinar cell
4
+ See 21 more…
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
58
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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