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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
19
ChIP-seq
Assay category
199
DNA accessibility
19
DNA binding
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
185
June, 2019
15
August, 2017
6
November, 2017
6
November, 2018
5
October, 2019
1
November, 2020
Available data
2691
bam
2492
bigWig
1426
tsv
1323
bed narrowPeak
893
fastq
671
bigBed narrowPeak
312
tagAlign
258
bed bed3+
255
bed broadPeak
218
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
20
bedpe bed3+
19
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
218
Homo sapiens
Biosample type
173
tissue
43
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
vein
2
adipose tissue
2
nerve
1
spleen
Project
218
AMP
Genome assembly (visualization)
216
GRCh38
195
hg19
Lab
218
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
vein
liver
BIOSAMPLE
ASSAY
218 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 15 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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