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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
total RNA-seq
159
ChIP-seq
80
single cell RNA-seq
41
ATAC-seq
8
DNase-seq
4
WGBS
2
FAIRE-seq
2
small RNA-seq
1
Hi-C
Assay category
406
Transcription
159
DNA binding
51
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
141
histone
141
histone modification
73
broad histone mark
68
narrow histone mark
18
transcription factor
9
RNA binding protein
Date released
159
August, 2017
153
July, 2018
72
September, 2018
42
October, 2018
41
May, 2021
39
April, 2018
31
November, 2019
26
February, 2021
10
March, 2020
8
October, 2019
7
August, 2020
7
November, 2018
5
October, 2017
5
September, 2017
4
July, 2019
4
June, 2019
3
August, 2018
3
September, 2020
1
June, 2018
1
May, 2019
Available data
686
bam
621
bigWig
471
fastq
417
tsv
212
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
16
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
615
Homo sapiens
Biosample type
373
tissue
192
primary cell
56
cell line
in vitro differentiated cells
Organ
621
pancreas
608
liver
513
connective tissue
425
adipose tissue
281
epithelium
223
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
18
ureter
16
spleen
vein
8
embryo
6
eye
1
pericardium
1
pituitary gland
Project
605
AMP
10
HPAP
6
T1D
Genome assembly (visualization)
609
GRCh38
605
hg19
Lab
610
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
53
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
organ_slims!
vein
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
621 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
small RNA-seq
Hi-C
tissue
islet of Langerhans
260
29
6
3
1
1
body of pancreas
2
26
4
4
2
2
pancreas
1
13
2
2
1
endocrine pancreas
14
primary cell
pancreatic alpha cell
10
7
12
13
pancreatic beta cell
10
7
12
10
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
4
8
12
5
pancreatic endocrine cell
23
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cell line
EndoC_BH1
33
13
2
Panc1
6
1
1
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