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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
Hi-C
Assay category
12
3D chromatin structure
Date released
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3356
bam
3094
bigWig
1761
bed narrowPeak
1555
tsv
1358
fastq
1029
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
12
bed bed3
12
hic
11
bedpe bed3+
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
12
Homo sapiens
Biosample type
4
primary cell
4
tissue
2
cell line
2
in vitro differentiated cells
Organ
6
pancreas
5
epithelium
1
blood vessel
1
heart
1
kidney
1
liver
1
vasculature
vein
Project
8
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
11
hg19
1
GRCh38
Lab
5
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
3
audit script error
3
inconsistent ontology term
organ_slims!
vein
month_released!
March, 2020
BIOSAMPLE
ASSAY
12 results
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Clear Filters
Hi-C
primary cell
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
2
heart
1
kidney
1
cell line
EndoC_BH1
1
HepG2
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
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