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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
3
ChIP-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
4
DNA accessibility
3
DNA binding
Target of assay
3
transcription factor
1
RNA binding protein
Date released
89
February, 2021
57
August, 2021
7
February, 2023
7
May, 2022
3
November, 2017
1
October, 2022
Available data
3372
bam
3114
bigWig
1764
bed narrowPeak
1600
tsv
1358
fastq
1029
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
22
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
163
Homo sapiens
Biosample type
157
tissue
4
cell line
3
in vitro differentiated cells
Organ
88
bone element
62
kidney
6
pancreas
4
skeleton
3
liver
1
blood vessel
1
epithelium
1
musculature of body
1
vasculature
vein
Project
164
AMP
Genome assembly (visualization)
7
hg19
Lab
98
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
organ_slims!
vein
BIOSAMPLE
ASSAY
164 results
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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 3 more…
cell line
HepG2
3
MIN6
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
See all biosamples
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