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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
209
ChIP-seq
197
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
9
RRBS
8
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
280
DNA accessibility
209
DNA binding
57
DNA methylation
8
3D chromatin structure
Target of assay
184
histone
184
histone modification
97
broad histone mark
87
narrow histone mark
20
control
8
RNA binding protein
8
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
31
July, 2019
13
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
552
bigWig
531
bam
351
fastq
270
tsv
249
bed narrowPeak
153
zippedFastqFolder
88
tagAlign
77
bigBed narrowPeak
35
bed bed3+
31
bed broadPeak
31
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
1007
Homo sapiens
Biosample type
2453
tissue
1007
primary cell
662
cell line
326
in vitro differentiated cells
10
stem cell
Organ
377
epithelium
305
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
478
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
564
hg19
482
GRCh38
Lab
443
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
30
audit script error
Audit category:
32
missing controlled_by
organ_slims!
vein
month_released!
August, 2017
BIOSAMPLE
ASSAY
1007 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
34
12
31
1
pancreatic beta cell
21
22
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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