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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
34
DNase-seq
7
ATAC-seq
6
total RNA-seq
4
Hi-C
WGBS
Assay category
43
DNA binding
41
DNA accessibility
6
Transcription
4
3D chromatin structure
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
control
11
narrow histone mark
Date released
43
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
4
July, 2019
2
February, 2020
Available data
87
bam
71
bed narrowPeak
69
bigWig
64
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
6
tsv
Organism
94
Homo sapiens
Biosample type
94
tissue
Organ
895
pancreas
786
liver
678
connective tissue
485
adipose tissue
477
epithelium
385
heart
354
kidney
286
brain
234
vasculature
blood vessel
159
bone element
141
artery
121
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
23
spleen
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
94
AMP
Genome assembly (visualization)
75
hg19
74
GRCh38
Lab
94
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
vein
blood vessel
assay_title!
WGBS
BIOSAMPLE
ASSAY
94 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
35
2
1
5
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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