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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
17
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
17
DNA binding
9
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
3
control
Date released
43
June, 2019
August, 2017
9
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
57
bam
55
bigWig
47
bed narrowPeak
47
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
9
tsv
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
69
Homo sapiens
Biosample type
56
tissue
13
primary cell
Organ
756
pancreas
736
liver
558
connective tissue
489
epithelium
434
adipose tissue
391
heart
350
kidney
284
brain
235
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
69
blood
69
bodily fluid
69
musculature of body
60
eye
43
nerve
37
embryo
25
spleen
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
69
AMP
Genome assembly (visualization)
57
hg19
53
GRCh38
Lab
69
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
organ_slims!
vein
assay_title!
RRBS
month_released!
August, 2017
BIOSAMPLE
ASSAY
69 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
1
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
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