Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
24
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
24
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
control
Date released
34
June, 2019
26
August, 2017
10
July, 2019
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
54
bigWig
46
bed narrowPeak
45
bed broadPeak
41
bam
33
bed bed3+
33
bigBed narrowPeak
32
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
80
Homo sapiens
Biosample type
74
tissue
6
primary cell
Organ
863
pancreas
790
liver
665
connective tissue
490
adipose tissue
431
epithelium
366
heart
329
kidney
255
brain
185
vasculature
180
blood vessel
136
artery
114
limb
80
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
80
AMP
Genome assembly (visualization)
59
hg19
40
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
organ_slims!
vein
audit.ERROR.category!
inconsistent ontology term
month_released!
May, 2019
BIOSAMPLE
ASSAY
80 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of arm
17
muscle of leg
12
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
+ See 3 more…
primary cell
skeletal muscle cell
1
2
1
skeletal muscle satellite cell
1
1
See all biosamples
Download