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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
29
ChIP-seq
6
Hi-C
4
RRBS
3
total RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
29
DNA binding
6
3D chromatin structure
5
DNA methylation
5
Transcription
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
32
June, 2019
26
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
February, 2020
2
May, 2022
1
January, 2018
Available data
57
bigWig
51
bed narrowPeak
45
bed broadPeak
44
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
5
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
80
Homo sapiens
Biosample type
80
tissue
primary cell
Organ
776
liver
643
connective tissue
599
pancreas
487
adipose tissue
377
heart
318
kidney
253
brain
196
blood vessel
196
vasculature
158
bone element
137
artery
119
limb
118
epithelium
80
musculature of body
61
blood
61
bodily fluid
55
eye
42
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
61
hg19
42
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
vein
month_released!
February, 2020
biosample_type!
primary cell
BIOSAMPLE
ASSAY
80 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
muscle of leg
13
7
1
muscle of arm
17
psoas muscle
2
2
1
gastrocnemius medialis
4
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