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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
5
RRBS
5
total RNA-seq
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
17
DNA binding
8
Transcription
5
DNA methylation
3
DNA accessibility
2
3D chromatin structure
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
3
control
Date released
11
August, 2017
11
June, 2019
5
July, 2019
5
March, 2020
2
May, 2022
1
February, 2020
1
January, 2018
Available data
29
bigWig
22
bed narrowPeak
17
bam
tagAlign
14
bed broadPeak
9
bigBed narrowPeak
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
fastq
2
hic
1
bigBed broadPeak
1
txt
Organism
36
Homo sapiens
Biosample type
22
tissue
14
primary cell
Organ
927
pancreas
705
liver
662
connective tissue
517
epithelium
483
adipose tissue
387
heart
354
kidney
230
vasculature
224
blood vessel
168
brain
159
bone element
135
artery
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
22
hg19
15
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
organ_slims!
vein
limb
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
RRBS
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
7
4
1
1
1
1
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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