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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
4
WGBS
2
pCHi-C
2
total RNA-seq
1
RNA microarray
Assay category
55
DNA binding
4
DNA methylation
DNA accessibility
2
Transcription
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
11
narrow histone mark
Date released
41
August, 2017
18
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
Available data
21
fastq
19
bam
8
tagAlign
3
tsv
1
bed broadPeak
1
bed narrowPeak
1
bedpe bed3+
1
bigWig
Organism
63
Homo sapiens
Biosample type
63
tissue
1
in vitro differentiated cells
Organ
239
liver
205
pancreas
158
epithelium
140
kidney
127
heart
98
connective tissue
89
bone element
66
brain
64
adipose tissue
44
vasculature
42
blood vessel
41
musculature of body
27
eye
26
limb
13
artery
12
nerve
10
lung
9
spleen
9
vein
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
GRCh38
418
hg19
Lab
64
AMP-T2D consortium
assay_slims!
DNA accessibility
assembly!
GRCh38
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
WGBS
pCHi-C
total RNA-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
1
in vitro differentiated cells
white fat cell
1
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