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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
133
ChIP-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
133
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
68
transcription factor
33
histone
33
histone modification
30
control
20
broad histone mark
15
RNA binding protein
13
narrow histone mark
10
chromatin remodeller
Date released
386
February, 2021
56
August, 2017
27
December, 2018
23
October, 2018
18
January, 2019
15
November, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
497
bam
473
bigWig
401
tsv
101
fastq
61
bed narrowPeak
60
bigBed narrowPeak
8
tagAlign
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
542
Homo sapiens
Biosample type
480
tissue
60
cell line
2
primary cell
1
in vitro differentiated cells
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
276
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
543
AMP
Genome assembly (visualization)
473
GRCh38
472
hg19
Lab
543
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
543 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
white adipose tissue
12
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cell line
GM12878
60
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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