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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
73
DNA binding
DNA methylation
2
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
50
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
Available data
437
bam
419
bigWig
401
tsv
39
fastq
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
478
Homo sapiens
Biosample type
476
tissue
2
primary cell
1
in vitro differentiated cells
Organ
761
liver
741
pancreas
652
connective tissue
479
adipose tissue
368
epithelium
296
heart
280
brain
275
kidney
187
vasculature
182
blood vessel
147
bone element
113
limb
96
artery
89
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
32
eye
22
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
479
AMP
Genome assembly (visualization)
420
hg19
419
GRCh38
Lab
479
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA methylation
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
479 results
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total RNA-seq
ChIP-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
1
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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