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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
ATAC-seq
3
small RNA-seq
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
73
DNA binding
6
DNA accessibility
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
51
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
438
bam
421
bigWig
401
tsv
40
fastq
11
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
4
bed bed3+
1
bed broadPeak
1
bedpe bed3+
Organism
482
Homo sapiens
Biosample type
480
tissue
2
primary cell
1
in vitro differentiated cells
Organ
885
pancreas
778
liver
668
connective tissue
483
adipose tissue
452
epithelium
313
heart
269
kidney
252
brain
222
vasculature
219
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
57
musculature of body
56
eye
41
nerve
37
embryo
22
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
483
AMP
Genome assembly (visualization)
424
hg19
420
GRCh38
Lab
483
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
DNA methylation
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
483 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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