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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
4
WGBS
2
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
54
DNA binding
4
DNA methylation
Transcription
2
DNA accessibility
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
10
narrow histone mark
Date released
40
August, 2017
18
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
March, 2020
1
November, 2019
Available data
44
bam
44
fastq
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
62
Homo sapiens
Biosample type
62
tissue
1
in vitro differentiated cells
Organ
250
pancreas
168
epithelium
138
liver
110
kidney
107
connective tissue
97
bone element
73
heart
72
vasculature
71
blood vessel
63
adipose tissue
52
artery
52
brain
36
eye
28
limb
25
musculature of body
14
blood
14
bodily fluid
12
skeleton
11
lung
11
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
63
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
63
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
bigWig
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
WGBS
ATAC-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
omental fat pad
8
adipose tissue
1
1
1
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
white fat cell
1
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