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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
pCHi-C
1
GRO-seq
1
RNA microarray
Assay category
Transcription
95
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
44
histone
44
histone modification
31
control
24
broad histone mark
20
narrow histone mark
20
transcription factor
5
RNA binding protein
Date released
57
August, 2017
23
October, 2018
13
December, 2017
9
February, 2018
2
January, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
67
fastq
66
bam
42
bigWig
27
bed narrowPeak
10
bigBed narrowPeak
9
bed bed3+
8
tagAlign
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
112
Homo sapiens
Biosample type
89
tissue
24
in vitro differentiated cells
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
113
AMP
Genome assembly (visualization)
42
hg19
40
GRCh38
1
hg18
Lab
113
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
3
inconsistent control read length
assay_slims!
Transcription
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
GRO-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
3
1
+ See 1 more…
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
white fat cell
1
See all biosamples
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