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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
38
DNase-seq
14
ATAC-seq
7
WGBS
4
Hi-C
2
pCHi-C
1
RNA microarray
Assay category
Transcription
139
DNA binding
52
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
81
histone
81
histone modification
54
broad histone mark
41
control
27
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
66
October, 2019
57
August, 2017
33
June, 2019
23
October, 2018
7
May, 2019
6
February, 2021
5
July, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
Available data
154
bam
114
bigWig
105
bed narrowPeak
94
bigBed narrowPeak
44
fastq
42
bed bed3+
39
bed broadPeak
38
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
tsv
Organism
204
Homo sapiens
Biosample type
204
tissue
1
in vitro differentiated cells
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
205
AMP
Genome assembly (visualization)
119
hg19
117
GRCh38
Lab
205
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
Transcription
BIOSAMPLE
ASSAY
205 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
+ See 15 more…
in vitro differentiated cells
white fat cell
1
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