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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
67
ChIP-seq
6
WGBS
ATAC-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
67
DNA binding
6
DNA methylation
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
12
transcription factor
11
narrow histone mark
Date released
386
February, 2021
55
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
439
bam
421
bigWig
401
tsv
42
fastq
9
bed narrowPeak
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
476
Homo sapiens
Biosample type
474
tissue
2
primary cell
1
in vitro differentiated cells
Organ
725
pancreas
635
connective tissue
477
adipose tissue
411
liver
367
epithelium
212
heart
175
kidney
155
brain
147
bone element
107
vasculature
105
blood vessel
71
artery
48
musculature of body
37
embryo
30
limb
27
eye
20
lung
16
nerve
14
blood
14
bodily fluid
11
spleen
9
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
477
AMP
Genome assembly (visualization)
413
GRCh38
412
hg19
Lab
477
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
477 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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