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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
37
ChIP-seq
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
37
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
19
control
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
23
October, 2018
16
August, 2017
12
July, 2019
1
June, 2019
1
November, 2018
Available data
439
bam
421
bigWig
401
tsv
42
fastq
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
439
Homo sapiens
Biosample type
437
tissue
2
primary cell
Organ
678
liver
624
pancreas
588
connective tissue
439
adipose tissue
293
epithelium
241
brain
199
heart
174
vasculature
169
blood vessel
144
kidney
106
limb
92
artery
60
blood
60
bodily fluid
58
bone element
57
musculature of body
41
nerve
36
embryo
23
spleen
20
vein
18
ureter
7
eye
1
pericardium
1
pituitary gland
Project
439
AMP
Genome assembly (visualization)
420
GRCh38
418
hg19
Lab
439
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
439 results
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total RNA-seq
ChIP-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
381
2
2
subcutaneous adipose tissue
6
12
1
omental fat pad
4
11
1
2
white adipose tissue
12
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
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