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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
78
ChIP-seq
34
ATAC-seq
DNase-seq
6
WGBS
6
pCHi-C
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
420
Transcription
78
DNA binding
34
DNA accessibility
7
DNA methylation
Target of assay
35
histone
35
histone modification
25
control
20
broad histone mark
18
transcription factor
15
narrow histone mark
6
RNA binding protein
Date released
386
February, 2021
57
August, 2017
32
February, 2023
23
October, 2018
22
October, 2019
13
July, 2019
3
February, 2020
3
June, 2019
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
443
bam
425
bigWig
406
tsv
43
fastq
40
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
4
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
545
Homo sapiens
Biosample type
539
tissue
6
primary cell
1
in vitro differentiated cells
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
489
adipose tissue
323
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
546
AMP
Genome assembly (visualization)
454
hg19
424
GRCh38
Lab
546
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
546 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
islet of Langerhans
14
2
1
4
omental fat pad
5
11
1
1
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primary cell
retinal pigment epithelial cell
3
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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