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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
19
ChIP-seq
4
ATAC-seq
3
small RNA-seq
2
DNase-seq
WGBS
Assay category
398
Transcription
19
DNA binding
6
DNA accessibility
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
15
August, 2017
12
July, 2019
5
October, 2018
1
January, 2018
1
June, 2019
1
November, 2018
1
October, 2017
1
October, 2019
Available data
440
bam
423
bigWig
401
tsv
41
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
423
Homo sapiens
Biosample type
421
tissue
2
primary cell
Organ
621
liver
619
pancreas
568
connective tissue
423
adipose tissue
301
epithelium
222
brain
178
heart
154
vasculature
149
blood vessel
131
kidney
90
limb
85
artery
67
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
15
vein
14
spleen
6
eye
1
pericardium
1
pituitary gland
Project
423
AMP
Genome assembly (visualization)
423
hg19
420
GRCh38
Lab
423
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
WGBS
BIOSAMPLE
ASSAY
423 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
tissue
adipose tissue
381
1
2
white adipose tissue
12
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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