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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
ATAC-seq
3
small RNA-seq
2
DNase-seq
pCHi-C
1
RNA microarray
Assay category
401
Transcription
73
DNA binding
8
DNA accessibility
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
51
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
440
bam
423
bigWig
400
tsv
40
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
Organism
482
Homo sapiens
Biosample type
481
tissue
2
primary cell
Organ
892
pancreas
781
liver
672
connective tissue
483
adipose tissue
471
epithelium
348
kidney
340
heart
282
brain
232
vasculature
227
blood vessel
158
bone element
141
artery
121
limb
89
musculature of body
69
blood
69
bodily fluid
56
eye
43
nerve
37
embryo
22
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
483
AMP
Genome assembly (visualization)
426
hg19
422
GRCh38
Lab
483
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
483 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
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