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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
19
ChIP-seq
6
ATAC-seq
3
small RNA-seq
2
DNase-seq
Assay category
399
Transcription
19
DNA binding
8
DNA accessibility
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
15
August, 2017
12
July, 2019
5
October, 2018
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
423
bigWig
421
bam
398
tsv
21
fastq
13
bed narrowPeak
10
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
tagAlign
Organism
426
Homo sapiens
Biosample type
424
tissue
2
primary cell
Organ
656
pancreas
622
liver
587
connective tissue
426
adipose tissue
305
epithelium
186
heart
164
vasculature
162
brain
159
blood vessel
125
kidney
96
limb
93
artery
70
bone element
70
musculature of body
55
blood
55
bodily fluid
33
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
1
pericardium
1
pituitary gland
Project
426
AMP
Genome assembly (visualization)
426
hg19
422
GRCh38
Lab
426
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
426 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
tissue
adipose tissue
382
1
3
white adipose tissue
12
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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