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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
6
ATAC-seq
6
WGBS
DNase-seq
pCHi-C
1
RNA microarray
Assay category
Transcription
73
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
57
August, 2017
23
October, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
42
bam
42
fastq
25
bigWig
11
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
Organism
85
Homo sapiens
Biosample type
86
tissue
Organ
589
liver
458
pancreas
304
epithelium
228
brain
194
heart
189
connective tissue
157
vasculature
153
blood vessel
146
kidney
96
bone element
86
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
53
musculature of body
36
nerve
34
eye
23
embryo
23
spleen
20
vein
12
skeleton
10
lung
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
Project
86
AMP
Genome assembly (visualization)
25
hg19
23
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
DNase-seq
assay_slims!
Transcription
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
ATAC-seq
WGBS
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
12
1
1
omental fat pad
11
1
white adipose tissue
12
adipose tissue
2
3
3
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