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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
WGBS
ATAC-seq
3
small RNA-seq
2
DNase-seq
pCHi-C
1
RNA microarray
Assay category
401
Transcription
73
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2021
1
June, 2019
1
May, 2023
1
November, 2018
Available data
439
bam
421
bigWig
400
tsv
41
fastq
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
482
Homo sapiens
Biosample type
481
tissue
2
primary cell
Organ
765
liver
731
pancreas
639
connective tissue
483
adipose tissue
350
epithelium
337
heart
277
brain
256
kidney
188
vasculature
183
blood vessel
113
limb
96
artery
85
musculature of body
68
blood
68
bodily fluid
62
bone element
42
nerve
31
embryo
29
eye
23
spleen
22
vein
19
lung
18
ureter
4
gonad
4
ovary
4
skeleton
2
pericardium
1
lymph node
1
pituitary gland
1
spinal cord
Project
483
AMP
Genome assembly (visualization)
421
GRCh38
420
hg19
Lab
483
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
ATAC-seq
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
483 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
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