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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
23
ChIP-seq
4
ATAC-seq
3
small RNA-seq
2
DNase-seq
pCHi-C
1
RNA microarray
Assay category
401
Transcription
23
DNA binding
6
DNA accessibility
Target of assay
18
control
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
October, 2017
1
October, 2019
Available data
424
bam
408
bigWig
400
tsv
25
fastq
9
bed narrowPeak
8
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
430
Homo sapiens
Biosample type
429
tissue
2
primary cell
Organ
733
liver
676
pancreas
536
connective tissue
431
adipose tissue
404
epithelium
344
heart
331
kidney
281
brain
234
vasculature
229
blood vessel
141
artery
121
limb
74
bone element
69
blood
69
bodily fluid
60
musculature of body
57
eye
43
nerve
31
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
431
AMP
Genome assembly (visualization)
410
hg19
407
GRCh38
Lab
431
AMP-T2D consortium
Audit category:
inconsistent ontology term
assay_title!
pCHi-C
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
431 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
1
2
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
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