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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
402
total RNA-seq
50
ChIP-seq
18
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
pCHi-C
1
RNA microarray
Assay category
405
Transcription
50
DNA binding
20
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
20
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
Date released
394
February, 2021
57
August, 2017
October, 2018
12
July, 2019
9
February, 2023
2
February, 2020
1
August, 2021
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
427
bam
420
bigWig
400
tsv
20
fastq
16
bed narrowPeak
8
tagAlign
6
bed bed3+
5
bigBed narrowPeak
4
bed bed3
4
txt
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
481
Homo sapiens
Biosample type
480
tissue
2
primary cell
Organ
892
pancreas
788
liver
656
connective tissue
522
epithelium
466
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
482
AMP
Genome assembly (visualization)
433
hg19
427
GRCh38
Lab
482
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
month_released!
October, 2018
BIOSAMPLE
ASSAY
482 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
1
2
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primary cell
mesenchymal stem cell of adipose
1
1
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