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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
total RNA-seq
85
RNA microarray
73
ChIP-seq
18
ATAC-seq
6
WGBS
pCHi-C
3
small RNA-seq
2
DNase-seq
Assay category
463
Transcription
73
DNA binding
20
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
536
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
9
February, 2023
2
February, 2020
1
August, 2021
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
508
bam
483
bigWig
458
tsv
88
txt
43
fastq
21
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
bed bed3
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
646
Homo sapiens
Biosample type
645
tissue
2
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
352
kidney
350
heart
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
647
AMP
Genome assembly (visualization)
496
hg19
490
GRCh38
Lab
647
AMP-T2D consortium
Audit category:
85
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
647 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
tissue
adipose tissue
382
2
3
3
bone element
84
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
12
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
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