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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
108
ChIP-seq
7
ATAC-seq
6
WGBS
4
DNase-seq
3
small RNA-seq
pCHi-C
1
RNA microarray
Assay category
406
Transcription
108
DNA binding
11
DNA accessibility
6
DNA methylation
Target of assay
56
histone
56
histone modification
36
broad histone mark
35
control
20
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
43
October, 2019
23
October, 2018
12
July, 2019
3
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
484
bam
456
bigWig
405
tsv
43
fastq
40
bed narrowPeak
36
bigBed narrowPeak
8
bed bed3+
8
tagAlign
5
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
531
Homo sapiens
Biosample type
530
tissue
2
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
352
kidney
350
heart
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
532
AMP
Genome assembly (visualization)
457
hg19
455
GRCh38
Lab
532
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
532 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
tibial nerve
5
35
1
2
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
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primary cell
mesenchymal stem cell of adipose
1
1
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