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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
90
ChIP-seq
6
ATAC-seq
6
WGBS
4
DNase-seq
3
small RNA-seq
2
Hi-C
pCHi-C
1
FAIRE-seq
1
RNA microarray
Assay category
401
Transcription
90
DNA binding
11
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
47
histone
47
histone modification
29
broad histone mark
26
control
18
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
22
October, 2019
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
462
bam
440
bigWig
400
tsv
43
fastq
26
bed narrowPeak
23
bigBed narrowPeak
8
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
Organism
510
Homo sapiens
Biosample type
487
tissue
24
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
352
kidney
350
heart
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
511
AMP
Genome assembly (visualization)
443
hg19
436
GRCh38
Lab
511
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
511 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
Hi-C
FAIRE-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
white adipose tissue
12
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primary cell
endothelial cell of umbilical vein
17
2
2
1
mesenchymal stem cell of adipose
1
1
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