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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
ATAC-seq
4
WGBS
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
398
Transcription
73
DNA binding
8
DNA accessibility
4
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
55
August, 2017
23
October, 2018
9
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
439
bam
422
bigWig
398
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
485
Homo sapiens
Biosample type
484
tissue
1
in vitro differentiated cells
1
primary cell
Organ
938
pancreas
785
liver
678
connective tissue
518
epithelium
486
adipose tissue
349
kidney
344
heart
280
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
90
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
486
AMP
Genome assembly (visualization)
423
hg19
419
GRCh38
Lab
486
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
small RNA-seq
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
486 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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