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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
19
ChIP-seq
4
ATAC-seq
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
395
Transcription
19
DNA binding
6
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
17
August, 2017
9
July, 2019
5
October, 2018
1
January, 2018
1
June, 2019
1
November, 2018
1
October, 2017
1
October, 2019
Available data
439
bam
422
bigWig
398
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
422
Homo sapiens
Biosample type
421
tissue
1
primary cell
Organ
621
pancreas
619
liver
567
connective tissue
422
adipose tissue
301
epithelium
218
brain
183
heart
155
vasculature
150
blood vessel
130
kidney
91
limb
85
artery
66
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
422
AMP
Genome assembly (visualization)
420
hg19
419
GRCh38
Lab
422
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
422 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
tissue
adipose tissue
381
1
2
2
white adipose tissue
12
omental fat pad
4
3
1
2
subcutaneous adipose tissue
6
2
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
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