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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
small RNA-seq
2
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
398
Transcription
73
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
9
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
438
bam
421
bigWig
398
tsv
44
fastq
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
5
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bedpe bed3+
1
bigBed broadPeak
Organism
486
Homo sapiens
Biosample type
485
tissue
1
in vitro differentiated cells
1
primary cell
Organ
940
pancreas
786
liver
663
connective tissue
504
epithelium
487
adipose tissue
317
heart
272
kidney
252
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
51
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
487
AMP
Genome assembly (visualization)
422
hg19
420
GRCh38
Lab
487
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
small RNA-seq
month_released!
June, 2019
BIOSAMPLE
ASSAY
487 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
1
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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