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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
total RNA-seq
85
RNA microarray
73
ChIP-seq
18
ATAC-seq
6
WGBS
3
pCHi-C
small RNA-seq
2
DNase-seq
Assay category
460
Transcription
73
DNA binding
20
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
536
February, 2021
57
August, 2017
23
October, 2018
9
February, 2023
9
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
505
bam
480
bigWig
456
tsv
88
txt
44
fastq
21
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
bed bed3
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
646
Homo sapiens
Biosample type
644
tissue
2
primary cell
1
in vitro differentiated cells
Organ
944
pancreas
788
liver
681
connective tissue
524
epithelium
488
adipose tissue
353
kidney
352
heart
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
646
AMP
1
T1D
Genome assembly (visualization)
493
hg19
487
GRCh38
Lab
646
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
647 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
tissue
adipose tissue
382
2
3
3
1
bone element
84
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
12
1
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primary cell
megakaryocyte
1
mesenchymal stem cell of adipose
1
in vitro differentiated cells
white fat cell
1
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