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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
412
total RNA-seq
95
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
GRO-seq
1
RNA microarray
Assay category
95
DNA binding
Target of assay
44
histone
44
histone modification
31
control
24
broad histone mark
20
narrow histone mark
20
transcription factor
5
RNA binding protein
Date released
50
August, 2017
23
October, 2018
13
December, 2017
9
February, 2018
Available data
59
bam
59
fastq
33
bigWig
21
bed narrowPeak
8
tagAlign
7
bed bed3+
6
bigBed narrowPeak
1
bed broadPeak
Organism
95
Homo sapiens
Biosample type
73
tissue
22
in vitro differentiated cells
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
95
AMP
Genome assembly (visualization)
34
hg19
33
GRCh38
Lab
95
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
2
in vitro differentiated cells
pancreatic endoderm
18
Hepatic endoderm
4
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