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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
35
ATAC-seq
6
WGBS
5
total RNA-seq
2
pCHi-C
2
single cell RNA-seq
1
RNA microarray
Assay category
74
DNA binding
35
DNA accessibility
7
Transcription
6
DNA methylation
Target of assay
44
control
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
Date released
42
August, 2017
35
February, 2023
18
October, 2018
16
October, 2019
5
February, 2020
3
August, 2021
2
February, 2021
2
May, 2019
1
August, 2018
1
March, 2020
Available data
41
bam
35
bed narrowPeak
23
fastq
9
tagAlign
8
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
bigWig
1
bedpe bed3+
Organism
124
Homo sapiens
Biosample type
122
tissue
2
cell line
1
in vitro differentiated cells
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
125
AMP
Genome assembly (visualization)
583
GRCh38
hg19
Lab
125
AMP-T2D consortium
assembly!
hg19
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
ATAC-seq
WGBS
total RNA-seq
pCHi-C
single cell RNA-seq
RNA microarray
tissue
coronary artery
2
35
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
tibial nerve
11
1
omental fat pad
8
1
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cell line
smooth muscle cell of the coronary artery
2
in vitro differentiated cells
white fat cell
1
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