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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
18
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
Assay category
399
Transcription
18
DNA binding
5
DNA accessibility
Target of assay
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
14
August, 2017
12
July, 2019
5
October, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
423
bam
422
bigWig
398
tsv
23
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
422
Homo sapiens
Biosample type
420
tissue
2
primary cell
Organ
631
pancreas
564
connective tissue
530
liver
422
adipose tissue
294
epithelium
220
heart
217
brain
205
kidney
190
vasculature
186
blood vessel
128
artery
95
limb
66
bone element
54
blood
54
bodily fluid
52
musculature of body
31
nerve
29
embryo
18
ureter
14
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
422
AMP
Genome assembly (visualization)
426
hg19
422
GRCh38
Lab
422
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
422 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
tissue
adipose tissue
382
1
white adipose tissue
12
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
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