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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
17
ChIP-seq
6
ATAC-seq
3
small RNA-seq
2
DNase-seq
Assay category
399
Transcription
17
DNA binding
8
DNA accessibility
Target of assay
17
transcription factor
5
RNA binding protein
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
13
August, 2017
12
July, 2019
5
October, 2018
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
421
bigWig
420
bam
398
tsv
20
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
424
Homo sapiens
Biosample type
422
tissue
2
primary cell
Organ
554
connective tissue
543
liver
516
pancreas
424
adipose tissue
221
epithelium
126
heart
99
kidney
97
vasculature
92
blood vessel
73
artery
70
bone element
54
blood
54
bodily fluid
48
limb
47
brain
46
musculature of body
33
eye
18
embryo
18
ureter
12
skeleton
8
spleen
7
nerve
5
vein
2
pericardium
Project
424
AMP
Genome assembly (visualization)
424
hg19
423
GRCh38
Lab
424
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
histone
BIOSAMPLE
ASSAY
424 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
tissue
adipose tissue
382
3
white adipose tissue
12
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
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