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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
6
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
6
DNA binding
5
DNA accessibility
3
Transcription
2
DNA methylation
Target of assay
5
RNA binding protein
5
transcription factor
1
histone
1
histone modification
1
narrow histone mark
Date released
5
October, 2018
4
August, 2017
3
July, 2019
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
16
bam
15
bigWig
11
bed narrowPeak
11
fastq
9
bigBed narrowPeak
3
tsv
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
16
Homo sapiens
Biosample type
15
tissue
1
primary cell
Organ
367
liver
251
pancreas
209
brain
197
epithelium
197
heart
194
kidney
133
vasculature
129
blood vessel
92
limb
81
connective tissue
74
artery
54
blood
54
bodily fluid
49
musculature of body
27
nerve
18
ureter
16
adipose tissue
16
spleen
15
embryo
12
vein
8
bone element
8
skeleton
6
eye
1
pituitary gland
Project
16
AMP
Genome assembly (visualization)
18
hg19
16
GRCh38
Lab
16
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
16 results
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Clear Filters
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
omental fat pad
3
1
1
2
subcutaneous adipose tissue
2
1
1
adipose tissue
1
2
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
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