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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
6
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
6
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
5
RNA binding protein
5
transcription factor
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
12
July, 2019
5
October, 2018
4
August, 2017
1
June, 2019
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
411
bam
410
bigWig
398
tsv
11
bed narrowPeak
11
fastq
9
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
411
Homo sapiens
Biosample type
409
tissue
2
primary cell
Organ
581
pancreas
548
connective tissue
526
liver
411
adipose tissue
273
epithelium
266
heart
214
brain
194
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
411
AMP
Genome assembly (visualization)
413
hg19
411
GRCh38
Lab
411
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
May, 2023
BIOSAMPLE
ASSAY
411 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
381
1
2
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
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