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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
1
ChIP-seq
Assay category
399
Transcription
5
DNA accessibility
2
DNA methylation
1
DNA binding
Target of assay
5
RNA binding protein
transcription factor
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
12
July, 2019
4
August, 2017
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
406
bam
405
bigWig
398
tsv
6
bed narrowPeak
6
fastq
4
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
407
Homo sapiens
Biosample type
405
tissue
2
primary cell
Organ
568
pancreas
526
connective tissue
407
adipose tissue
264
epithelium
249
heart
244
liver
211
brain
196
kidney
182
vasculature
179
blood vessel
123
artery
96
limb
66
bone element
53
musculature of body
31
nerve
26
embryo
18
ureter
12
vein
10
spleen
8
skeleton
5
eye
3
blood
3
bodily fluid
1
pericardium
1
pituitary gland
Project
407
AMP
Genome assembly (visualization)
409
hg19
407
GRCh38
Lab
407
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
407 results
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total RNA-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
ChIP-seq
tissue
adipose tissue
382
2
1
omental fat pad
4
1
1
2
subcutaneous adipose tissue
6
1
1
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
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