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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
121
ChIP-seq
8
snATAC-seq
7
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
121
DNA binding
17
DNA accessibility
6
DNA methylation
Target of assay
56
transcription factor
33
histone
33
histone modification
30
control
20
broad histone mark
15
RNA binding protein
13
narrow histone mark
10
chromatin remodeller
Date released
386
February, 2021
45
August, 2017
27
December, 2018
23
October, 2018
18
January, 2019
16
November, 2018
12
July, 2019
8
January, 2021
2
February, 2020
2
January, 2018
1
August, 2021
1
February, 2023
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
490
bam
468
bigWig
401
tsv
92
fastq
67
bed narrowPeak
64
bigBed narrowPeak
8
tagAlign
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
bedpe bed3+
Organism
546
Homo sapiens
Biosample type
476
tissue
61
cell line
10
primary cell
Organ
885
pancreas
776
liver
666
connective tissue
498
epithelium
478
adipose tissue
390
heart
354
kidney
282
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
539
AMP
8
T1D
Genome assembly (visualization)
469
hg19
466
GRCh38
Lab
539
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
547 results
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total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
visceral abdominal adipose tissue
3
+ See 1 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
mesenchymal stem cell of adipose
1
1
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