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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
total RNA-seq
85
RNA microarray
61
ChIP-seq
18
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
Assay category
463
Transcription
61
DNA binding
20
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
12
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
536
February, 2021
45
August, 2017
23
October, 2018
12
July, 2019
9
February, 2023
2
February, 2020
1
August, 2021
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
496
bam
471
bigWig
459
tsv
88
txt
32
fastq
21
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
4
bed bed3
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
bedpe bed3+
Organism
636
Homo sapiens
Biosample type
634
tissue
3
primary cell
Organ
885
pancreas
776
liver
666
connective tissue
498
epithelium
478
adipose tissue
390
heart
354
kidney
282
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
636
AMP
1
T1D
Genome assembly (visualization)
484
hg19
478
GRCh38
Lab
636
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
637 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
tissue
adipose tissue
382
2
3
3
1
bone element
84
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
12
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
megakaryocyte
1
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