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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
1
RNA microarray
1
pCHi-C
1
total RNA-seq
Assay category
61
DNA binding
8
DNA accessibility
6
DNA methylation
1
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
12
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
45
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
430
bam
413
bigWig
tsv
32
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
77
Homo sapiens
Biosample type
77
tissue
1
in vitro differentiated cells
Organ
604
liver
475
pancreas
347
epithelium
330
kidney
256
brain
225
heart
189
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
87
musculature of body
83
artery
78
adipose tissue
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
22
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
0
mammary gland
Project
78
AMP
Genome assembly (visualization)
16
hg19
14
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
pCHi-C
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
adipose tissue
2
3
3
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
white fat cell
1
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